pennlinc
    xcp_d
    0.10.0rc3
Namespace
pennlinc
Image / Tag
xcp_d:0.10.0rc3
Content Digest
sha256:48e649c33a32102213b2acf312d1af5e29840ceb6c503046e08ef2e9c76a5f11
Details
Created

2024-10-31 19:26:42 UTC

Size

5.29 GB

Content Digest
Labels
  • org.label-schema.build-date
    2024-10-31T19:25:58Z
  • org.label-schema.description
    xcp_d- postprocessing of fmriprep outputs
  • org.label-schema.name
    xcp_d
  • org.label-schema.schema-version
    1.0
  • org.label-schema.url
    https://xcp-d.readthedocs.io/
  • org.label-schema.vcs-ref
    f927f34
  • org.label-schema.vcs-url
    https://github.com/PennLINC/xcp_d
  • org.label-schema.version
    0.10.0rc3
  • org.opencontainers.image.ref.name
    ubuntu
  • org.opencontainers.image.version
    22.04
Environment
AFNI_IMSAVE_WARNINGS

NO

AFNI_INSTALLDIR

/opt/afni-latest

ANTSPATH

/usr/lib/ants

C3DPATH

/opt/c3d/bin

CPATH

/usr/local/miniconda/include:

FIX_VERTEX_AREA

FSLDIR

/opt/fsl

FSLGECUDAQ

cuda.q

FSLLOCKDIR

FSLMACHINELIST

FSLMULTIFILEQUIT

TRUE

FSLOUTPUTTYPE

NIFTI_GZ

FSLREMOTECALL

FSL_DEPS

libquadmath0;libnewimage.so;libmiscmaths.so

HOME

/home/xcp_d

LANG

C.UTF-8

LC_ALL

C.UTF-8

LD_LIBRARY_PATH

/opt/fsl/lib:

MKL_NUM_THREADS

1

OMP_NUM_THREADS

1

OS

Linux

PATH

/usr/lib/ants/ants-2.5.3/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest

PYTHONNOUSERSITE

1

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History
2024-09-11 16:25:16 UTC

/bin/sh -c #(nop) ARG RELEASE

2024-09-11 16:25:16 UTC

/bin/sh -c #(nop) ARG LAUNCHPAD_BUILD_ARCH

2024-09-11 16:25:16 UTC

/bin/sh -c #(nop) LABEL org.opencontainers.image.ref.name=ubuntu

2024-09-11 16:25:16 UTC

/bin/sh -c #(nop) LABEL org.opencontainers.image.version=22.04

2024-09-11 16:25:17 UTC

/bin/sh -c #(nop) ADD file:ebe009f86035c175ba244badd298a2582914415cf62783d510eab3a311a5d4e1 in /

2024-09-11 16:25:18 UTC

/bin/sh -c #(nop) CMD ["/bin/bash"]

2024-10-15 18:46:43 UTC (buildkit.dockerfile.v0)

COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit

2024-10-15 18:46:44 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c mkdir /AtlasPack # buildkit

2024-10-15 18:46:44 UTC (buildkit.dockerfile.v0)

COPY /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ # buildkit

2024-10-15 18:46:44 UTC (buildkit.dockerfile.v0)

COPY /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ # buildkit

2024-10-15 18:46:44 UTC (buildkit.dockerfile.v0)

COPY /AtlasPack/atlas-4S*.tsv /AtlasPack/ # buildkit

2024-10-15 18:46:44 UTC (buildkit.dockerfile.v0)

COPY /AtlasPack/*.json /AtlasPack/ # buildkit

2024-10-15 18:47:36 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get update && apt-get install -y --no-install-recommends apt-utils autoconf build-essential bzip2 ca-certificates curl dc git graphviz libtool locales lsb-release pandoc pandoc-citeproc pkg-config unzip wget xvfb && curl -sSL https://deb.nodesource.com/setup_21.x | bash - && apt-get install -y --no-install-recommends nodejs && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit

2024-10-15 18:47:47 UTC (buildkit.dockerfile.v0)

ENV OS=Linux FIX_VERTEX_AREA=

2024-10-15 18:47:47 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-py310_23.10.0-1-Linux-x86_64.sh && bash Miniconda3-py310_23.10.0-1-Linux-x86_64.sh -b -p /usr/local/miniconda && rm Miniconda3-py310_23.10.0-1-Linux-x86_64.sh # buildkit

2024-10-15 18:47:47 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1

2024-10-15 18:50:36 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c conda install -y python=3.10 libxslt=1.1 mkl=2021.2 mkl-service=2.3 numpy=1.18.1 pandas=1.2 scikit-learn=0.24 scipy=1.6 traits=6.2 zstd=1.4; sync && pip install matplotlib requests templateflow ; sync && chmod -R a+rX /usr/local/miniconda; sync && chmod +x /usr/local/miniconda/bin/*; sync && conda clean --all; sync # buildkit

2024-10-15 18:50:42 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSL "http://neuro.debian.net/lists/$( lsb_release -c | cut -f2 ).us-ca.full" >> /etc/apt/sources.list.d/neurodebian.sources.list && apt-key add /usr/local/etc/neurodebian.gpg && (apt-key adv --refresh-keys --keyserver hkp://ha.pool.sks-keyservers.net 0xA5D32F012649A5A9 || true) # buildkit

2024-10-15 18:50:59 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends connectome-workbench git-annex-standalone && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit

2024-10-15 18:51:29 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get update -qq && apt-get install -y -q --no-install-recommends apt-utils ed gsl-bin curl libglib2.0-0 libglu1-mesa-dev libglw1-mesa libgomp1 libjpeg62 libpng16-16 libxm4 libxpm4 netpbm tcsh xfonts-base xvfb && ln -s /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0 /usr/lib/x86_64-linux-gnu/libXp.so.6 && ln -s /usr/lib/x86_64-linux-gnu/libpng16.so.16.37.0 /usr/lib/x86_64-linux-gnu/libpng12.so.0 && ln -s /usr/lib/x86_64-linux-gnu/libgsl.so.27.0.0 /usr/lib/x86_64-linux-gnu/libgsl.so.0 && echo "Downloading AFNI ..." && mkdir -p /opt/afni-latest && curl -fsSL --retry 5 https://afni.nimh.nih.gov/pub/dist/tgz/linux_openmp_64.tgz | tar -xz -C /opt/afni-latest --strip-components 1 # buildkit

2024-10-15 18:51:29 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest AFNI_INSTALLDIR=/opt/afni-latest AFNI_IMSAVE_WARNINGS=NO

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c echo "Downloading C3D ..." && mkdir /opt/c3d && curl -sSL --retry 5 https://sourceforge.net/projects/c3d/files/c3d/1.0.0/c3d-1.0.0-Linux-x86_64.tar.gz/download | tar -xzC /opt/c3d --strip-components=1 # buildkit

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/slicer /opt/fsl/lib/slicer # buildkit

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/slicesdir /opt/fsl/lib/slicesdir # buildkit

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/pngappend /opt/fsl/lib/pngappend # buildkit

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/remove_ext /opt/fsl/lib/remove_ext # buildkit

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

COPY /usr/bin/fsl5.0-slicer /opt/fsl/bin/fsl-5.0-slicer # buildkit

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

COPY /usr/bin/fsl5.0-slicesdir /opt/fsl/bin/fsl5.0-slicesdir # buildkit

2024-10-15 18:51:32 UTC (buildkit.dockerfile.v0)

COPY /usr/bin/fsl5.0-pngappend /opt/fsl/bin/fsl5.0-pngappend # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/bin/fsl5.0-remove_ext /opt/fsl/bin/fsl5.0-remove_ext # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/share/fsl/5.0/bin/slicer /opt/fsl/bin/slicer # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/share/fsl/5.0/bin/slicesdir /opt/fsl/bin/slicesdir # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/share/fsl/5.0/bin/pngappend /opt/fsl/bin/pngappend # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/share/fsl/5.0/bin/remove_ext /opt/fsl/bin/remove_ext # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/libnewimage.so /opt/fsl/lib/libnewimage.so # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/libmiscmaths.so /opt/fsl/lib/libmiscmaths.so # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/libmiscpic.so /opt/fsl/lib/libmiscpic.so # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/libfslio.so /opt/fsl/lib/libfslio.so # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/libutils.so /opt/fsl/lib/libutils.so # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/libprob.so /opt/fsl/lib/libprob.so # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/libnewmat.so.10.0.0 /opt/fsl/lib/libnewmat.so.10 # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/libniftiio.so.2 /opt/fsl/lib/libniftiio.so.2 # buildkit

2024-10-15 18:51:33 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/libznz.so.2 /opt/fsl/lib/libznz.so.2 # buildkit

2024-10-15 18:51:34 UTC (buildkit.dockerfile.v0)

COPY /usr/lib/fsl/5.0/applywarp /opt/fsl/lib/applywarp # buildkit

2024-10-15 18:51:34 UTC (buildkit.dockerfile.v0)

ENV FSLDIR=/opt/fsl FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE FSLLOCKDIR= FSLMACHINELIST= FSLREMOTECALL= FSLGECUDAQ=cuda.q LD_LIBRARY_PATH=/opt/fsl/lib: PATH=/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest FSL_DEPS=libquadmath0;libnewimage.so;libmiscmaths.so

2024-10-15 18:51:34 UTC (buildkit.dockerfile.v0)

ENV ANTSPATH=/usr/lib/ants

2024-10-15 18:51:55 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c mkdir -p $ANTSPATH && curl -sSL "https://github.com/ANTsX/ANTs/releases/download/v2.5.3/ants-2.5.3-ubuntu-22.04-X64-gcc.zip" -o /tmp/ants.zip && unzip /tmp/ants.zip -d $ANTSPATH && rm /tmp/ants.zip # buildkit

2024-10-15 18:51:55 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/lib/ants/ants-2.5.3/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest

2024-10-15 18:51:57 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c npm install -g svgo # buildkit

2024-10-15 18:52:10 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c npm install -g bids-validator@1.8.4 # buildkit

2024-10-15 18:52:10 UTC (buildkit.dockerfile.v0)

ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=1

2024-10-15 18:52:10 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c useradd -m -s /bin/bash -G users xcp_d # buildkit

2024-10-15 18:52:10 UTC (buildkit.dockerfile.v0)

WORKDIR /home/xcp_d

2024-10-15 18:52:10 UTC (buildkit.dockerfile.v0)

ENV HOME=/home/xcp_d

2024-10-15 18:52:11 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c python -c "from matplotlib import font_manager" && sed -i 's/\(backend *: \).*$/\1Agg/g' $( python -c "import matplotlib; print(matplotlib.matplotlib_fname())" ) # buildkit

2024-10-15 18:52:11 UTC (buildkit.dockerfile.v0)

COPY scripts/fetch_templates.py fetch_templates.py # buildkit

2024-10-15 18:52:25 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c python fetch_templates.py && rm fetch_templates.py && find $HOME/.cache/templateflow -type d -exec chmod go=u {} + && find $HOME/.cache/templateflow -type f -exec chmod go=u {} + # buildkit

2024-10-15 18:52:25 UTC (buildkit.dockerfile.v0)

COPY scripts/fix_atlaspack.py fix_atlaspack.py # buildkit

2024-10-15 18:52:26 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c python fix_atlaspack.py && rm fix_atlaspack.py # buildkit

2024-10-15 18:52:26 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c strip --remove-section=.note.ABI-tag /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.3 && ldconfig # buildkit

2024-10-15 18:52:30 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -o pandoc-2.2.2.1-1-amd64.deb -sSL "https://github.com/jgm/pandoc/releases/download/2.2.2.1/pandoc-2.2.2.1-1-amd64.deb" && dpkg -i pandoc-2.2.2.1-1-amd64.deb && rm pandoc-2.2.2.1-1-amd64.deb # buildkit

2024-10-15 18:52:32 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty # buildkit

2024-10-15 18:52:33 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c ldconfig # buildkit

2024-10-15 18:52:33 UTC (buildkit.dockerfile.v0)

WORKDIR /tmp/

2024-10-31 19:26:04 UTC (buildkit.dockerfile.v0)

COPY . /src/xcp_d # buildkit

2024-10-31 19:26:35 UTC (buildkit.dockerfile.v0)

ARG VERSION=0.0.1

2024-10-31 19:26:35 UTC (buildkit.dockerfile.v0)

RUN |1 VERSION=0.10.0rc3 /bin/sh -c echo "${VERSION}" > /src/xcp_d/xcp_d/VERSION && echo "include xcp_d/VERSION" >> /src/xcp_d/MANIFEST.in && pip install --no-cache-dir "/src/xcp_d[all]" # buildkit

2024-10-31 19:26:40 UTC (buildkit.dockerfile.v0)

RUN |1 VERSION=0.10.0rc3 /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty # buildkit

2024-10-31 19:26:41 UTC (buildkit.dockerfile.v0)

RUN |1 VERSION=0.10.0rc3 /bin/sh -c ldconfig # buildkit

2024-10-31 19:26:42 UTC (buildkit.dockerfile.v0)

WORKDIR /tmp/

2024-10-31 19:26:42 UTC (buildkit.dockerfile.v0)

ENTRYPOINT ["/usr/local/miniconda/bin/xcp_d"]

2024-10-31 19:26:42 UTC (buildkit.dockerfile.v0)

ARG BUILD_DATE

2024-10-31 19:26:42 UTC (buildkit.dockerfile.v0)

ARG VCS_REF

2024-10-31 19:26:42 UTC (buildkit.dockerfile.v0)

ARG VERSION

2024-10-31 19:26:42 UTC (buildkit.dockerfile.v0)

LABEL org.label-schema.build-date=2024-10-31T19:25:58Z org.label-schema.name=xcp_d org.label-schema.description=xcp_d- postprocessing of fmriprep outputs org.label-schema.url=https://xcp-d.readthedocs.io/ org.label-schema.vcs-ref=f927f34 org.label-schema.vcs-url=https://github.com/PennLINC/xcp_d org.label-schema.version=0.10.0rc3 org.label-schema.schema-version=1.0

Danger Zone
Delete Tag

Please be careful as this will not just delete the reference but also the actual content!

For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.

Delete