Namespace
pennlinc
Image / Tagxcp_d:0.11.0
Content Digestsha256:2fc4614356dee487edcd9fc1829e4c444bfad0997fa42df02d092d5296518edf
Details
2025-07-15 18:15:59 UTC
5.2 GB
Labels
-
org.label-schema.build-date2025-07-15T18:15:18Z
-
org.label-schema.descriptionxcp_d- postprocessing of fmriprep outputs
-
org.label-schema.namexcp_d
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org.label-schema.schema-version1.0
-
org.label-schema.urlhttps://xcp-d.readthedocs.io/
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org.label-schema.vcs-reffe19e74
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org.label-schema.vcs-urlhttps://github.com/PennLINC/xcp_d
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org.label-schema.version0.11.0
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org.opencontainers.image.ref.nameubuntu
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org.opencontainers.image.version22.04
Environment
AFNI_IMSAVE_WARNINGSNO
AFNI_INSTALLDIR/opt/afni-latest
ANTSPATH/usr/lib/ants
C3DPATH/opt/c3d/bin
CPATH/usr/local/miniconda/include:
FIX_VERTEX_AREA FSLDIR/opt/fsl
FSLGECUDAQcuda.q
FSLLOCKDIR FSLMACHINELIST FSLMULTIFILEQUITTRUE
FSLOUTPUTTYPENIFTI_GZ
FSLREMOTECALL FSL_DEPSlibquadmath0;libnewimage.so;libmiscmaths.so
HOME/home/xcp_d
LANGC.UTF-8
LC_ALLC.UTF-8
LD_LIBRARY_PATH/opt/fsl/lib:
MKL_NUM_THREADS1
OMP_NUM_THREADS1
OSLinux
PATH/usr/lib/ants/ants-2.5.3/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest
PYTHONNOUSERSITE1
Layers
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History
/bin/sh -c #(nop) ARG RELEASE
2024-09-11 16:25:16 UTC/bin/sh -c #(nop) ARG LAUNCHPAD_BUILD_ARCH
2024-09-11 16:25:16 UTC/bin/sh -c #(nop) LABEL org.opencontainers.image.ref.name=ubuntu
2024-09-11 16:25:16 UTC/bin/sh -c #(nop) LABEL org.opencontainers.image.version=22.04
2024-09-11 16:25:17 UTC/bin/sh -c #(nop) ADD file:ebe009f86035c175ba244badd298a2582914415cf62783d510eab3a311a5d4e1 in /
2024-09-11 16:25:18 UTC/bin/sh -c #(nop) CMD ["/bin/bash"]
2025-01-17 22:35:28 UTC (buildkit.dockerfile.v0)COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit
2025-01-17 22:35:28 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c mkdir /AtlasPack # buildkit
2025-01-17 22:35:28 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ # buildkit
2025-01-17 22:35:28 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ # buildkit
2025-01-17 22:35:28 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/atlas-4S*.tsv /AtlasPack/ # buildkit
2025-01-17 22:35:28 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/*.json /AtlasPack/ # buildkit
2025-01-17 22:36:20 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c apt-get update && apt-get install -y --no-install-recommends apt-utils autoconf build-essential bzip2 ca-certificates curl dc git graphviz libtool locales lsb-release pandoc pandoc-citeproc pkg-config unzip wget xvfb && curl -sSL https://deb.nodesource.com/setup_21.x | bash - && apt-get install -y --no-install-recommends nodejs && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit
2025-01-17 22:36:30 UTC (buildkit.dockerfile.v0)ENV OS=Linux FIX_VERTEX_AREA=
2025-01-17 22:36:30 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-py310_23.10.0-1-Linux-x86_64.sh && bash Miniconda3-py310_23.10.0-1-Linux-x86_64.sh -b -p /usr/local/miniconda && rm Miniconda3-py310_23.10.0-1-Linux-x86_64.sh # buildkit
2025-01-17 22:36:30 UTC (buildkit.dockerfile.v0)ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1
2025-01-17 22:39:26 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c conda install -y python=3.10 libxslt=1.1 mkl=2021.2 mkl-service=2.3 numpy=1.18.1 pandas=1.2 scikit-learn=0.24 scipy=1.6 traits=6.2 zstd=1.4; sync && pip install matplotlib requests templateflow ; sync && chmod -R a+rX /usr/local/miniconda; sync && chmod +x /usr/local/miniconda/bin/*; sync && conda clean --all; sync # buildkit
2025-01-17 22:39:33 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c curl -sSL "http://neuro.debian.net/lists/$( lsb_release -c | cut -f2 ).us-ca.full" >> /etc/apt/sources.list.d/neurodebian.sources.list && apt-key add /usr/local/etc/neurodebian.gpg && (apt-key adv --refresh-keys --keyserver hkp://ha.pool.sks-keyservers.net 0xA5D32F012649A5A9 || true) # buildkit
2025-01-17 22:39:47 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends connectome-workbench=1.5.0-2 git-annex-standalone && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit
2025-01-17 22:40:23 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c apt-get update -qq && apt-get install -y -q --no-install-recommends apt-utils ed gsl-bin curl libglib2.0-0 libglu1-mesa-dev libglw1-mesa libgomp1 libjpeg62 libpng16-16 libxm4 libxpm4 netpbm tcsh xfonts-base xvfb && ln -s /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0 /usr/lib/x86_64-linux-gnu/libXp.so.6 && ln -s /usr/lib/x86_64-linux-gnu/libpng16.so.16.37.0 /usr/lib/x86_64-linux-gnu/libpng12.so.0 && ln -s /usr/lib/x86_64-linux-gnu/libgsl.so.27.0.0 /usr/lib/x86_64-linux-gnu/libgsl.so.0 && echo "Downloading AFNI ..." && mkdir -p /opt/afni-latest && curl -fsSL --retry 5 https://afni.nimh.nih.gov/pub/dist/tgz/linux_openmp_64.tgz | tar -xz -C /opt/afni-latest --strip-components 1 # buildkit
2025-01-17 22:40:23 UTC (buildkit.dockerfile.v0)ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest AFNI_INSTALLDIR=/opt/afni-latest AFNI_IMSAVE_WARNINGS=NO
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c echo "Downloading C3D ..." && mkdir /opt/c3d && curl -sSL --retry 5 https://sourceforge.net/projects/c3d/files/c3d/1.0.0/c3d-1.0.0-Linux-x86_64.tar.gz/download | tar -xzC /opt/c3d --strip-components=1 # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/slicer /opt/fsl/lib/slicer # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/slicesdir /opt/fsl/lib/slicesdir # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/pngappend /opt/fsl/lib/pngappend # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/remove_ext /opt/fsl/lib/remove_ext # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-slicer /opt/fsl/bin/fsl-5.0-slicer # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-slicesdir /opt/fsl/bin/fsl5.0-slicesdir # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-pngappend /opt/fsl/bin/fsl5.0-pngappend # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-remove_ext /opt/fsl/bin/fsl5.0-remove_ext # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/slicer /opt/fsl/bin/slicer # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/slicesdir /opt/fsl/bin/slicesdir # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/pngappend /opt/fsl/bin/pngappend # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/remove_ext /opt/fsl/bin/remove_ext # buildkit
2025-01-17 22:40:26 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libnewimage.so /opt/fsl/lib/libnewimage.so # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libmiscmaths.so /opt/fsl/lib/libmiscmaths.so # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libmiscpic.so /opt/fsl/lib/libmiscpic.so # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libfslio.so /opt/fsl/lib/libfslio.so # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libutils.so /opt/fsl/lib/libutils.so # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libprob.so /opt/fsl/lib/libprob.so # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/libnewmat.so.10.0.0 /opt/fsl/lib/libnewmat.so.10 # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/libniftiio.so.2 /opt/fsl/lib/libniftiio.so.2 # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/libznz.so.2 /opt/fsl/lib/libznz.so.2 # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/applywarp /opt/fsl/lib/applywarp # buildkit
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)ENV FSLDIR=/opt/fsl FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE FSLLOCKDIR= FSLMACHINELIST= FSLREMOTECALL= FSLGECUDAQ=cuda.q LD_LIBRARY_PATH=/opt/fsl/lib: PATH=/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest FSL_DEPS=libquadmath0;libnewimage.so;libmiscmaths.so
2025-01-17 22:40:27 UTC (buildkit.dockerfile.v0)ENV ANTSPATH=/usr/lib/ants
2025-01-17 22:40:50 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c mkdir -p $ANTSPATH && curl -sSL "https://github.com/ANTsX/ANTs/releases/download/v2.5.3/ants-2.5.3-ubuntu-22.04-X64-gcc.zip" -o /tmp/ants.zip && unzip /tmp/ants.zip -d $ANTSPATH && rm /tmp/ants.zip # buildkit
2025-01-17 22:40:50 UTC (buildkit.dockerfile.v0)ENV PATH=/usr/lib/ants/ants-2.5.3/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/afni-latest
2025-01-17 22:40:51 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c npm install -g svgo # buildkit
2025-01-17 22:41:03 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c npm install -g bids-validator@1.8.4 # buildkit
2025-01-17 22:41:03 UTC (buildkit.dockerfile.v0)ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=1
2025-01-17 22:41:03 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c useradd -m -s /bin/bash -G users xcp_d # buildkit
2025-01-17 22:41:03 UTC (buildkit.dockerfile.v0)WORKDIR /home/xcp_d
2025-01-17 22:41:03 UTC (buildkit.dockerfile.v0)ENV HOME=/home/xcp_d
2025-01-17 22:41:04 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c python -c "from matplotlib import font_manager" && sed -i 's/\(backend *: \).*$/\1Agg/g' $( python -c "import matplotlib; print(matplotlib.matplotlib_fname())" ) # buildkit
2025-01-17 22:41:04 UTC (buildkit.dockerfile.v0)COPY scripts/fetch_templates.py fetch_templates.py # buildkit
2025-01-17 22:41:17 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c python fetch_templates.py && rm fetch_templates.py && find $HOME/.cache/templateflow -type d -exec chmod go=u {} + && find $HOME/.cache/templateflow -type f -exec chmod go=u {} + # buildkit
2025-01-17 22:41:17 UTC (buildkit.dockerfile.v0)COPY scripts/fix_atlaspack.py fix_atlaspack.py # buildkit
2025-01-17 22:41:17 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c python fix_atlaspack.py && rm fix_atlaspack.py # buildkit
2025-01-17 22:41:18 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c strip --remove-section=.note.ABI-tag /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.3 && ldconfig # buildkit
2025-01-17 22:41:21 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c curl -o pandoc-2.2.2.1-1-amd64.deb -sSL "https://github.com/jgm/pandoc/releases/download/2.2.2.1/pandoc-2.2.2.1-1-amd64.deb" && dpkg -i pandoc-2.2.2.1-1-amd64.deb && rm pandoc-2.2.2.1-1-amd64.deb # buildkit
2025-01-17 22:41:23 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty # buildkit
2025-01-17 22:41:23 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c ldconfig # buildkit
2025-01-17 22:41:23 UTC (buildkit.dockerfile.v0)WORKDIR /tmp/
2025-07-15 18:15:25 UTC (buildkit.dockerfile.v0)COPY . /src/xcp_d # buildkit
2025-07-15 18:15:54 UTC (buildkit.dockerfile.v0)ARG VERSION=0.0.1
2025-07-15 18:15:54 UTC (buildkit.dockerfile.v0)RUN |1 VERSION=0.11.0 /bin/sh -c echo "${VERSION}" > /src/xcp_d/xcp_d/VERSION && echo "include xcp_d/VERSION" >> /src/xcp_d/MANIFEST.in && pip install --no-cache-dir "/src/xcp_d[all]" # buildkit
2025-07-15 18:15:58 UTC (buildkit.dockerfile.v0)RUN |1 VERSION=0.11.0 /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty # buildkit
2025-07-15 18:15:59 UTC (buildkit.dockerfile.v0)RUN |1 VERSION=0.11.0 /bin/sh -c ldconfig # buildkit
2025-07-15 18:15:59 UTC (buildkit.dockerfile.v0)WORKDIR /tmp/
2025-07-15 18:15:59 UTC (buildkit.dockerfile.v0)ENTRYPOINT ["/usr/local/miniconda/bin/xcp_d"]
2025-07-15 18:15:59 UTC (buildkit.dockerfile.v0)ARG BUILD_DATE
2025-07-15 18:15:59 UTC (buildkit.dockerfile.v0)ARG VCS_REF
2025-07-15 18:15:59 UTC (buildkit.dockerfile.v0)ARG VERSION
2025-07-15 18:15:59 UTC (buildkit.dockerfile.v0)LABEL org.label-schema.build-date=2025-07-15T18:15:18Z org.label-schema.name=xcp_d org.label-schema.description=xcp_d- postprocessing of fmriprep outputs org.label-schema.url=https://xcp-d.readthedocs.io/ org.label-schema.vcs-ref=fe19e74 org.label-schema.vcs-url=https://github.com/PennLINC/xcp_d org.label-schema.version=0.11.0 org.label-schema.schema-version=1.0
Delete Tag
Please be careful as this will not just delete the reference but also the actual content!
For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.