pennlinc
    xcp_d
    0.2.1
Namespace
pennlinc
Image / Tag
xcp_d:0.2.1
Content Digest
sha256:935067a019ec6d1bf1faa1aba3fdd0b3e0d34b4c37e51b57ef70145c890d351c
Details
Created

2022-11-02 19:33:31 UTC

Size

7.06 GB

Content Digest
Labels
  • org.label-schema.build-date
    2022-11-02T19:30:27Z
  • org.label-schema.description
    xcp_d- postprocessing of fmriprep outputs
  • org.label-schema.name
    xcp_d
  • org.label-schema.schema-version
    1.0
  • org.label-schema.url
    https://xcp-abcd.readthedocs.io/
  • org.label-schema.vcs-ref
    b9ceef2
  • org.label-schema.vcs-url
    https://github.com/PennLINC/xcp_d
  • org.label-schema.version
    0.2.1
Environment
AFNI_IMSAVE_WARNINGS

NO

AFNI_MODELPATH

/usr/lib/afni/models

AFNI_PLUGINPATH

/usr/lib/afni/plugins

AFNI_TTATLAS_DATASET

/usr/share/afni/atlases

ANTSPATH

/usr/lib/ants

C3DPATH

/opt/c3d/bin

CPATH

/usr/local/miniconda/include:

FIX_VERTEX_AREA

FREESURFER_HOME

/opt/freesurfer

FSF_OUTPUT_FORMAT

nii.gz

FUNCTIONALS_DIR

/opt/freesurfer/sessions

HOME

/home/xcp_d

LANG

C.UTF-8

LC_ALL

C.UTF-8

LOCAL_DIR

/opt/freesurfer/local

MINC_BIN_DIR

/opt/freesurfer/mni/bin

MINC_LIB_DIR

/opt/freesurfer/mni/lib

MKL_NUM_THREADS

1

MNI_DATAPATH

/opt/freesurfer/mni/data

MNI_DIR

/opt/freesurfer/mni

MNI_PERL5LIB

/opt/freesurfer/mni/lib/perl5/5.8.5

OMP_NUM_THREADS

1

OS

Linux

PATH

/usr/local/miniconda/bin:/usr/lib/ants:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

PERL5LIB

/opt/freesurfer/mni/lib/perl5/5.8.5

PYTHONNOUSERSITE

1

SUBJECTS_DIR

/opt/freesurfer/subjects

Layers

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[#019] sha256:e882a7ffdaa7f504e20f4e5d73e8380fbcd3481c475dd5ec42897194f30b383b - 2.26% (164 MB)

[#020] sha256:54f91bd9efc7f4247d96f649bc6f92eef7a4dd386508af4e0769aa9013713406 - 0.0% (10.2 KB)

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[#022] sha256:dc9a73d4b7cfd32605b4c0ff08587e4af4d6038046a15122c80d649f0a5e2120 - 16.86% (1.19 GB)

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[#024] sha256:7aa072cea88976ed4b084810ac1e74d6e318958534884c35333ef040ef3d26a2 - 2.3% (166 MB)

[#025] sha256:5cd509fc6e0947b4317d28b6a5ac237bcac36bbdc0c5758c4c74a30b4e2627f3 - 0.0% (10.1 KB)

History
2022-06-06 22:21:04 UTC

/bin/sh -c #(nop) ADD file:40290d9a94ae76c35ab1f57178130ce1c5b976e34a91e77472ecf7e945ab64f9 in /

2022-06-06 22:21:05 UTC

/bin/sh -c #(nop) CMD ["bash"]

2022-09-27 14:29:54 UTC (buildkit.dockerfile.v0)

COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit

2022-09-27 14:30:57 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get update && apt-get install -y --no-install-recommends apt-utils wget curl bzip2 locales unzip ca-certificates xvfb build-essential autoconf libtool pkg-config graphviz pandoc pandoc-citeproc git && curl -sSL https://deb.nodesource.com/setup_14.x | bash - && apt-get install -y --no-install-recommends nodejs && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit

2022-09-27 14:31:04 UTC (buildkit.dockerfile.v0)

ENV OS=Linux FIX_VERTEX_AREA=

2022-09-27 14:31:04 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c echo "Downloading C3D ..." && mkdir /opt/c3d && curl -sSL --retry 5 https://sourceforge.net/projects/c3d/files/c3d/1.0.0/c3d-1.0.0-Linux-x86_64.tar.gz/download | tar -xzC /opt/c3d --strip-components=1 # buildkit

2022-09-27 14:31:04 UTC (buildkit.dockerfile.v0)

ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2022-09-27 14:31:07 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSL "http://neuro.debian.net/lists/$( lsb_release -c | cut -f2 ).us-ca.full" >> /etc/apt/sources.list.d/neurodebian.sources.list && apt-key add /usr/local/etc/neurodebian.gpg && (apt-key adv --refresh-keys --keyserver hkp://ha.pool.sks-keyservers.net 0xA5D32F012649A5A9 || true) # buildkit

2022-09-27 14:31:45 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends afni=18.0.05+git24-gb25b21054~dfsg.1-1~nd17.10+1+nd18.04+1 connectome-workbench=1.5.0-1~nd18.04+1 git-annex-standalone && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit

2022-09-27 14:33:50 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz | tar zxv --no-same-owner -C /opt --exclude='freesurfer/diffusion' --exclude='freesurfer/docs' --exclude='freesurfer/fsfast' --exclude='freesurfer/lib/cuda' --exclude='freesurfer/lib/qt' --exclude='freesurfer/matlab' --exclude='freesurfer/mni/share/man' --exclude='freesurfer/subjects/fsaverage_sym' --exclude='freesurfer/subjects/fsaverage3' --exclude='freesurfer/subjects/fsaverage4' --exclude='freesurfer/subjects/cvs_avg35' --exclude='freesurfer/subjects/cvs_avg35_inMNI152' --exclude='freesurfer/subjects/bert' --exclude='freesurfer/subjects/lh.EC_average' --exclude='freesurfer/subjects/rh.EC_average' --exclude='freesurfer/subjects/sample-*.mgz' --exclude='freesurfer/subjects/V1_average' --exclude='freesurfer/trctrain' # buildkit

2022-09-27 14:33:50 UTC (buildkit.dockerfile.v0)

ENV FSF_OUTPUT_FORMAT=nii.gz FREESURFER_HOME=/opt/freesurfer

2022-09-27 14:33:50 UTC (buildkit.dockerfile.v0)

ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local MINC_BIN_DIR=/opt/freesurfer/mni/bin MINC_LIB_DIR=/opt/freesurfer/mni/lib MNI_DATAPATH=/opt/freesurfer/mni/data

2022-09-27 14:33:50 UTC (buildkit.dockerfile.v0)

ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2022-09-27 14:33:50 UTC (buildkit.dockerfile.v0)

ENV AFNI_MODELPATH=/usr/lib/afni/models AFNI_IMSAVE_WARNINGS=NO AFNI_TTATLAS_DATASET=/usr/share/afni/atlases AFNI_PLUGINPATH=/usr/lib/afni/plugins

2022-09-27 14:33:50 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2022-09-27 14:33:50 UTC (buildkit.dockerfile.v0)

ENV ANTSPATH=/usr/lib/ants

2022-09-27 14:34:14 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c mkdir -p $ANTSPATH && curl -sSL "https://dl.dropbox.com/s/gwf51ykkk5bifyj/ants-Linux-centos6_x86_64-v2.3.4.tar.gz" | tar -xzC $ANTSPATH --strip-components 1 # buildkit

2022-09-27 14:34:14 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/lib/ants:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2022-09-27 14:34:22 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sL https://deb.nodesource.com/setup_14.x | bash - # buildkit

2022-09-27 14:34:24 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get install -y nodejs # buildkit

2022-09-27 14:34:26 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c npm install -g svgo # buildkit

2022-09-27 14:35:08 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c npm install -g bids-validator@1.8.0 # buildkit

2022-09-27 14:35:27 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-py38_4.9.2-Linux-x86_64.sh && bash Miniconda3-py38_4.9.2-Linux-x86_64.sh -b -p /usr/local/miniconda && rm Miniconda3-py38_4.9.2-Linux-x86_64.sh # buildkit

2022-09-27 14:35:27 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/local/miniconda/bin:/usr/lib/ants:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1

2022-09-27 14:36:47 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c conda install -y python=3.8 pip=21.0 mkl=2021.2 mkl-service=2.3 numpy=1.18.1 scipy=1.6 scikit-learn=0.24 matplotlib=3.3 pandas=1.2 libxslt=1.1 traits=6.2 zstd=1.4; sync && chmod -R a+rX /usr/local/miniconda; sync && chmod +x /usr/local/miniconda/bin/*; sync && conda clean -y --all && sync && rm -rf ~/.conda ~/.cache/pip/*; sync # buildkit

2022-09-27 14:36:47 UTC (buildkit.dockerfile.v0)

ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=1

2022-09-27 14:36:48 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c useradd -m -s /bin/bash -G users xcp_d # buildkit

2022-09-27 14:36:48 UTC (buildkit.dockerfile.v0)

WORKDIR /home/xcp_d

2022-09-27 14:36:48 UTC (buildkit.dockerfile.v0)

ENV HOME=/home/xcp_d

2022-09-27 14:36:49 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c python -c "from matplotlib import font_manager" && sed -i 's/\(backend *: \).*$/\1Agg/g' $( python -c "import matplotlib; print(matplotlib.matplotlib_fname())" ) # buildkit

2022-09-27 14:37:10 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c pip install --no-cache-dir "templateflow ~= 0.6.1 " && python -c "from templateflow import api as tfapi; tfapi.get('MNI152NLin2009cAsym', resolution=2, suffix='T1w', desc=None); tfapi.get(template='MNI152NLin6Asym',resolution=2, suffix='T1w'); tfapi.get(template='fsLR',density='32k',suffix='sphere'); tfapi.get('MNI152NLin2009cAsym', resolution=1, desc='carpet',suffix='dseg'); tfapi.get(template='MNI152NLin2009cAsym',mode='image',suffix='xfm',extension='.h5'); tfapi.get(template='fsLR',density='32k',desc='vaavg', suffix='midthickness',extension='.gii'); tfapi.get('fsLR', density='32k'); " && find $HOME/.cache/templateflow -type d -exec chmod go=u {} + && find $HOME/.cache/templateflow -type f -exec chmod go=u {} + # buildkit

2022-09-27 14:37:14 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -o pandoc-2.2.2.1-1-amd64.deb -sSL "https://github.com/jgm/pandoc/releases/download/2.2.2.1/pandoc-2.2.2.1-1-amd64.deb" && dpkg -i pandoc-2.2.2.1-1-amd64.deb && rm pandoc-2.2.2.1-1-amd64.deb # buildkit

2022-09-27 14:37:14 UTC (buildkit.dockerfile.v0)

ARG VERSION=0.0.1

2022-09-27 14:37:15 UTC (buildkit.dockerfile.v0)

RUN |1 VERSION=0.0.1 /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty # buildkit

2022-09-27 14:37:16 UTC (buildkit.dockerfile.v0)

RUN |1 VERSION=0.0.1 /bin/sh -c ldconfig # buildkit

2022-09-27 14:37:16 UTC (buildkit.dockerfile.v0)

WORKDIR /tmp/

2022-11-02 19:30:55 UTC

/bin/sh -c #(nop) COPY dir:405fa4639a972e204ad511170868c2f0ec1c914e7d225cf021d60cee069b5344 in /src/xcp_d

2022-11-02 19:30:58 UTC

/bin/sh -c #(nop) ARG VERSION=0.0.1

2022-11-02 19:33:22 UTC

|1 VERSION=0.2.1 /bin/sh -c echo "${VERSION}" > /src/xcp_d/xcp_d/VERSION && echo "include xcp_d/VERSION" >> /src/xcp_d/MANIFEST.in && pip install --no-cache-dir "/src/xcp_d[all]"

2022-11-02 19:33:28 UTC

|1 VERSION=0.2.1 /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty

2022-11-02 19:33:30 UTC

|1 VERSION=0.2.1 /bin/sh -c ldconfig

2022-11-02 19:33:31 UTC

/bin/sh -c #(nop) WORKDIR /tmp/

2022-11-02 19:33:31 UTC

/bin/sh -c #(nop) ENTRYPOINT ["/usr/local/miniconda/bin/xcp_d"]

2022-11-02 19:33:31 UTC

/bin/sh -c #(nop) ARG BUILD_DATE

2022-11-02 19:33:31 UTC

/bin/sh -c #(nop) ARG VCS_REF

2022-11-02 19:33:31 UTC

/bin/sh -c #(nop) ARG VERSION

2022-11-02 19:33:31 UTC

/bin/sh -c #(nop) LABEL org.label-schema.build-date=2022-11-02T19:30:27Z org.label-schema.name=xcp_d org.label-schema.description=xcp_d- postprocessing of fmriprep outputs org.label-schema.url=https://xcp-abcd.readthedocs.io/ org.label-schema.vcs-ref=b9ceef2 org.label-schema.vcs-url=https://github.com/PennLINC/xcp_d org.label-schema.version=0.2.1 org.label-schema.schema-version=1.0

Danger Zone
Delete Tag

Please be careful as this will not just delete the reference but also the actual content!

For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.

Delete