pennlinc
    xcp_d
    0.3.3rc3
Namespace
pennlinc
Image / Tag
xcp_d:0.3.3rc3
Content Digest
sha256:c00568ecd0b4e3ad6d0c1c8a7c7c5ec55646fcb430510bd408893d14d66f3371
Details
Created

2023-02-14 15:15:29 UTC

Size

6.78 GB

Content Digest
Labels
  • org.label-schema.build-date
    2023-02-14T15:06:39Z
  • org.label-schema.description
    xcp_d- postprocessing of fmriprep outputs
  • org.label-schema.name
    xcp_d
  • org.label-schema.schema-version
    1.0
  • org.label-schema.url
    https://xcp-abcd.readthedocs.io/
  • org.label-schema.vcs-ref
    023725d
  • org.label-schema.vcs-url
    https://github.com/PennLINC/xcp_d
  • org.label-schema.version
    0.3.3rc3
Environment
AFNI_IMSAVE_WARNINGS

NO

AFNI_MODELPATH

/usr/lib/afni/models

AFNI_PLUGINPATH

/usr/lib/afni/plugins

AFNI_TTATLAS_DATASET

/usr/share/afni/atlases

ANTSPATH

/usr/lib/ants

C3DPATH

/opt/c3d/bin

CPATH

/usr/local/miniconda/include:

FIX_VERTEX_AREA

FREESURFER_HOME

/opt/freesurfer

FSF_OUTPUT_FORMAT

nii.gz

FUNCTIONALS_DIR

/opt/freesurfer/sessions

HOME

/home/xcp_d

LANG

C.UTF-8

LC_ALL

C.UTF-8

LOCAL_DIR

/opt/freesurfer/local

MINC_BIN_DIR

/opt/freesurfer/mni/bin

MINC_LIB_DIR

/opt/freesurfer/mni/lib

MKL_NUM_THREADS

1

MNI_DATAPATH

/opt/freesurfer/mni/data

MNI_DIR

/opt/freesurfer/mni

MNI_PERL5LIB

/opt/freesurfer/mni/lib/perl5/5.8.5

OMP_NUM_THREADS

1

OS

Linux

PATH

/usr/lib/ants:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/miniconda/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

PERL5LIB

/opt/freesurfer/mni/lib/perl5/5.8.5

PYTHONNOUSERSITE

1

SUBJECTS_DIR

/opt/freesurfer/subjects

Layers

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[#003] sha256:6de57fa22593e526594140993b66167e4899c8bfe720701ea516f639d5f5477b - 0.66% (45.9 MB)

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[#008] sha256:f6217bd0ed386469a641c1e5757b102403d764d1c4b011ca320d5f1c3c957d8b - 40.74% (2.76 GB)

[#009] sha256:7ea6333879643186acd9e6ac58ac2bfe8150584e00487522f63b36199397f1cc - 8.68% (602 MB)

[#010] sha256:d1705231236320d0092812dbe5ff91a7aaca50f0a094d04bb5d9931799336bec - 0.43% (29.5 MB)

[#011] sha256:b29725d7a2579b11aba87396235dde0dbc3973b83ea82c700f42d106313b5beb - 0.0% (383 Bytes)

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[#014] sha256:0dc2e45e22ab348ea5c56f66971227034d12763e83eea4d25d89b2d8f0b7c68d - 0.0% (4.44 KB)

[#015] sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 - 0.0% (32 Bytes)

[#016] sha256:d1add774fe21372a7879c7d1860a79901cc52cfdec0fe4167822e9688ec36a75 - 0.0% (18 KB)

[#017] sha256:4ea9e590a1f287dd2d320ecd7341c45a4834826f6650f7ca7c9f41c1b5c9b14c - 2.96% (205 MB)

[#018] sha256:aaa0dea697aacfb550b5abf68140e4a53332a8ea42287c1e60d69e01890bd7a5 - 0.36% (25.1 MB)

[#019] sha256:643f169505d1dabec4fc1562bd89f3dab5a6c8ac682e39faf66a2c683d6c131c - 2.41% (167 MB)

[#020] sha256:ef37891d4c38c381bbca979700608744692ec5375eabdf92031bda7cb1d8d2d4 - 0.0% (10.2 KB)

[#021] sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 - 0.0% (32 Bytes)

[#022] sha256:2d22ffe1b8dbff230acd4607907668a60dd7b772b5b716beccd517f61b22d6aa - 10.79% (749 MB)

[#023] sha256:048176342c183f66771d19b1a2d32ca5183263f2882ec2a0ff7fe0413331891b - 12.9% (895 MB)

[#024] sha256:84e19aa79f17d7b500b3e7767e476046208d7fff13a5d01013c4f655c228443b - 2.44% (169 MB)

[#025] sha256:f300c2cc97fabffff0f881ddd859bd72bfc9039a5e141a05feb75c749c3468ae - 0.0% (10.1 KB)

History
2022-06-06 22:21:04 UTC

/bin/sh -c #(nop) ADD file:40290d9a94ae76c35ab1f57178130ce1c5b976e34a91e77472ecf7e945ab64f9 in /

2022-06-06 22:21:05 UTC

/bin/sh -c #(nop) CMD ["bash"]

2023-02-13 22:44:01 UTC (buildkit.dockerfile.v0)

COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit

2023-02-13 22:44:52 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get update && apt-get install -y --no-install-recommends apt-utils autoconf build-essential bzip2 ca-certificates curl git graphviz libtool locales pandoc pandoc-citeproc pkg-config unzip wget xvfb && curl -sSL https://deb.nodesource.com/setup_14.x | bash - && apt-get install -y --no-install-recommends nodejs && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit

2023-02-13 22:44:56 UTC (buildkit.dockerfile.v0)

ENV OS=Linux FIX_VERTEX_AREA=

2023-02-13 22:44:56 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c echo "Downloading C3D ..." && mkdir /opt/c3d && curl -sSL --retry 5 https://sourceforge.net/projects/c3d/files/c3d/1.0.0/c3d-1.0.0-Linux-x86_64.tar.gz/download | tar -xzC /opt/c3d --strip-components=1 # buildkit

2023-02-13 22:44:56 UTC (buildkit.dockerfile.v0)

ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2023-02-13 22:45:06 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSL "http://neuro.debian.net/lists/$( lsb_release -c | cut -f2 ).us-ca.full" >> /etc/apt/sources.list.d/neurodebian.sources.list && apt-key add /usr/local/etc/neurodebian.gpg && (apt-key adv --refresh-keys --keyserver hkp://ha.pool.sks-keyservers.net 0xA5D32F012649A5A9 || true) # buildkit

2023-02-13 22:45:22 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-py38_4.9.2-Linux-x86_64.sh && bash Miniconda3-py38_4.9.2-Linux-x86_64.sh -b -p /usr/local/miniconda && rm Miniconda3-py38_4.9.2-Linux-x86_64.sh # buildkit

2023-02-13 22:45:22 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/local/miniconda/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1

2023-02-13 22:46:39 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c conda install -y python=3.8 libxslt=1.1 matplotlib=3.3 mkl=2021.2 mkl-service=2.3 numpy=1.18.1 pandas=1.2 pip=21.0 scikit-learn=0.24 scipy=1.6 traits=6.2 zstd=1.4; sync && chmod -R a+rX /usr/local/miniconda; sync && chmod +x /usr/local/miniconda/bin/*; sync && conda clean -y --all; sync && conda clean -tipsy; sync && rm -rf ~/.conda ~/.cache/pip/*; sync # buildkit

2023-02-13 22:47:05 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends afni=18.0.05+git24-gb25b21054~dfsg.1-1~nd17.10+1+nd18.04+1 connectome-workbench=1.5.0-1~nd18.04+1 git-annex-standalone && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit

2023-02-13 22:48:40 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz | tar zxv --no-same-owner -C /opt --exclude='freesurfer/diffusion' --exclude='freesurfer/docs' --exclude='freesurfer/fsfast' --exclude='freesurfer/lib/cuda' --exclude='freesurfer/lib/qt' --exclude='freesurfer/matlab' --exclude='freesurfer/mni/share/man' --exclude='freesurfer/subjects/fsaverage_sym' --exclude='freesurfer/subjects/fsaverage3' --exclude='freesurfer/subjects/fsaverage4' --exclude='freesurfer/subjects/cvs_avg35' --exclude='freesurfer/subjects/cvs_avg35_inMNI152' --exclude='freesurfer/subjects/bert' --exclude='freesurfer/subjects/lh.EC_average' --exclude='freesurfer/subjects/rh.EC_average' --exclude='freesurfer/subjects/sample-*.mgz' --exclude='freesurfer/subjects/V1_average' --exclude='freesurfer/trctrain' # buildkit

2023-02-13 22:48:40 UTC (buildkit.dockerfile.v0)

ENV FREESURFER_HOME=/opt/freesurfer FSF_OUTPUT_FORMAT=nii.gz

2023-02-13 22:48:40 UTC (buildkit.dockerfile.v0)

ENV FUNCTIONALS_DIR=/opt/freesurfer/sessions LOCAL_DIR=/opt/freesurfer/local MINC_BIN_DIR=/opt/freesurfer/mni/bin MINC_LIB_DIR=/opt/freesurfer/mni/lib MNI_DIR=/opt/freesurfer/mni MNI_DATAPATH=/opt/freesurfer/mni/data

2023-02-13 22:48:40 UTC (buildkit.dockerfile.v0)

ENV MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 SUBJECTS_DIR=/opt/freesurfer/subjects PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/miniconda/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2023-02-13 22:48:40 UTC (buildkit.dockerfile.v0)

ENV AFNI_MODELPATH=/usr/lib/afni/models AFNI_IMSAVE_WARNINGS=NO AFNI_TTATLAS_DATASET=/usr/share/afni/atlases AFNI_PLUGINPATH=/usr/lib/afni/plugins PATH=/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/miniconda/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2023-02-13 22:48:40 UTC (buildkit.dockerfile.v0)

ENV ANTSPATH=/usr/lib/ants

2023-02-13 22:48:57 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c mkdir -p $ANTSPATH && curl -sSL "https://dl.dropbox.com/s/gwf51ykkk5bifyj/ants-Linux-centos6_x86_64-v2.3.4.tar.gz" | tar -xzC $ANTSPATH --strip-components 1 # buildkit

2023-02-13 22:48:57 UTC (buildkit.dockerfile.v0)

ENV PATH=/usr/lib/ants:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/miniconda/bin:/opt/c3d/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

2023-02-13 22:49:03 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -sL https://deb.nodesource.com/setup_14.x | bash - # buildkit

2023-02-13 22:49:05 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c apt-get install -y nodejs # buildkit

2023-02-13 22:49:07 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c npm install -g svgo # buildkit

2023-02-13 22:49:31 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c npm install -g bids-validator@1.8.0 # buildkit

2023-02-13 22:49:31 UTC (buildkit.dockerfile.v0)

ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=1

2023-02-13 22:49:32 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c useradd -m -s /bin/bash -G users xcp_d # buildkit

2023-02-13 22:49:32 UTC (buildkit.dockerfile.v0)

WORKDIR /home/xcp_d

2023-02-13 22:49:32 UTC (buildkit.dockerfile.v0)

ENV HOME=/home/xcp_d

2023-02-13 22:49:33 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c python -c "from matplotlib import font_manager" && sed -i 's/\(backend *: \).*$/\1Agg/g' $( python -c "import matplotlib; print(matplotlib.matplotlib_fname())" ) # buildkit

2023-02-13 22:49:51 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c pip install --no-cache-dir "templateflow ~= 0.8.1 " && python -c "from templateflow import api as tfapi; tfapi.get('MNI152NLin2009cAsym', resolution=2, suffix='T1w', desc=None); tfapi.get(template='MNI152NLin6Asym',resolution=2, suffix='T1w'); tfapi.get(template='fsLR',density='32k',suffix='sphere'); tfapi.get('MNI152NLin2009cAsym', resolution=1, desc='carpet',suffix='dseg'); tfapi.get(template='MNI152NLin2009cAsym',mode='image',suffix='xfm',extension='.h5'); tfapi.get(template='fsLR',density='32k',desc='vaavg', suffix='midthickness',extension='.gii'); tfapi.get('fsLR', density='32k'); " && find $HOME/.cache/templateflow -type d -exec chmod go=u {} + && find $HOME/.cache/templateflow -type f -exec chmod go=u {} + # buildkit

2023-02-13 22:49:53 UTC (buildkit.dockerfile.v0)

RUN /bin/sh -c curl -o pandoc-2.2.2.1-1-amd64.deb -sSL "https://github.com/jgm/pandoc/releases/download/2.2.2.1/pandoc-2.2.2.1-1-amd64.deb" && dpkg -i pandoc-2.2.2.1-1-amd64.deb && rm pandoc-2.2.2.1-1-amd64.deb # buildkit

2023-02-13 22:49:53 UTC (buildkit.dockerfile.v0)

ARG VERSION=0.0.1

2023-02-13 22:49:54 UTC (buildkit.dockerfile.v0)

RUN |1 VERSION=0.0.1 /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty # buildkit

2023-02-13 22:49:55 UTC (buildkit.dockerfile.v0)

RUN |1 VERSION=0.0.1 /bin/sh -c ldconfig # buildkit

2023-02-13 22:49:55 UTC (buildkit.dockerfile.v0)

WORKDIR /tmp/

2023-02-14 15:10:45 UTC

/bin/sh -c #(nop) COPY dir:60a091166f7d71b880a011721944aa4238850398a53142ce8b64f5522160d408 in /src/xcp_d

2023-02-14 15:10:48 UTC

/bin/sh -c #(nop) ARG VERSION=0.0.1

2023-02-14 15:15:20 UTC

|1 VERSION=0.3.3rc3 /bin/sh -c echo "${VERSION}" > /src/xcp_d/xcp_d/VERSION && echo "include xcp_d/VERSION" >> /src/xcp_d/MANIFEST.in && pip install --no-cache-dir "/src/xcp_d[all]" && chmod -R a+rX /usr/local/miniconda; sync && chmod +x /usr/local/miniconda/bin/*; sync && conda clean -y --all; sync && conda clean -tipsy; sync

2023-02-14 15:15:26 UTC

|1 VERSION=0.3.3rc3 /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty

2023-02-14 15:15:28 UTC

|1 VERSION=0.3.3rc3 /bin/sh -c ldconfig

2023-02-14 15:15:28 UTC

/bin/sh -c #(nop) WORKDIR /tmp/

2023-02-14 15:15:28 UTC

/bin/sh -c #(nop) ENTRYPOINT ["/usr/local/miniconda/bin/xcp_d"]

2023-02-14 15:15:28 UTC

/bin/sh -c #(nop) ARG BUILD_DATE

2023-02-14 15:15:29 UTC

/bin/sh -c #(nop) ARG VCS_REF

2023-02-14 15:15:29 UTC

/bin/sh -c #(nop) ARG VERSION

2023-02-14 15:15:29 UTC

/bin/sh -c #(nop) LABEL org.label-schema.build-date=2023-02-14T15:06:39Z org.label-schema.name=xcp_d org.label-schema.description=xcp_d- postprocessing of fmriprep outputs org.label-schema.url=https://xcp-abcd.readthedocs.io/ org.label-schema.vcs-ref=023725d org.label-schema.vcs-url=https://github.com/PennLINC/xcp_d org.label-schema.version=0.3.3rc3 org.label-schema.schema-version=1.0

Danger Zone
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Please be careful as this will not just delete the reference but also the actual content!

For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.

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