Namespace
pennlinc
Image / Tagxcp_d:0.6.3
Content Digestsha256:5fef3fbde8f93f27d582acdc54c6bb362c62950b3b33dc8790b36c490128497e
Details
2024-03-08 17:12:22 UTC
5.37 GB
Labels
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org.label-schema.build-date2024-03-08T17:11:31Z
-
org.label-schema.descriptionxcp_d- postprocessing of fmriprep outputs
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org.label-schema.namexcp_d
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org.label-schema.schema-version1.0
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org.label-schema.urlhttps://xcp-d.readthedocs.io/
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org.label-schema.vcs-ref2bca701
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org.label-schema.vcs-urlhttps://github.com/PennLINC/xcp_d
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org.label-schema.version0.6.3
Environment
AFNI_IMSAVE_WARNINGSNO
AFNI_MODELPATH/usr/lib/afni/models
AFNI_PLUGINPATH/usr/lib/afni/plugins
AFNI_TTATLAS_DATASET/usr/share/afni/atlases
ANTSPATH/usr/lib/ants
C3DPATH/opt/c3d/bin
CPATH/usr/local/miniconda/include:
FIX_VERTEX_AREA FREESURFER_HOME/opt/freesurfer
FSF_OUTPUT_FORMATnii.gz
FSLDIR/opt/fsl
FSLGECUDAQcuda.q
FSLLOCKDIR FSLMACHINELIST FSLMULTIFILEQUITTRUE
FSLOUTPUTTYPENIFTI_GZ
FSLREMOTECALL FSL_DEPSlibquadmath0;libnewimage.so;libmiscmaths.so
FUNCTIONALS_DIR/opt/freesurfer/sessions
HOME/home/xcp_d
LANGC.UTF-8
LC_ALLC.UTF-8
LD_LIBRARY_PATH/opt/fsl/lib:
LOCAL_DIR/opt/freesurfer/local
MINC_BIN_DIR/opt/freesurfer/mni/bin
MINC_LIB_DIR/opt/freesurfer/mni/lib
MKL_NUM_THREADS1
MNI_DATAPATH/opt/freesurfer/mni/data
MNI_DIR/opt/freesurfer/mni
MNI_PERL5LIB/opt/freesurfer/mni/lib/perl5/5.8.5
OMP_NUM_THREADS1
OSLinux
PATH/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PERL5LIB/opt/freesurfer/mni/lib/perl5/5.8.5
PYTHONNOUSERSITE1
SUBJECTS_DIR/opt/freesurfer/subjects
Layers
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History
/bin/sh -c #(nop) ADD file:40290d9a94ae76c35ab1f57178130ce1c5b976e34a91e77472ecf7e945ab64f9 in /
2022-06-06 22:21:05 UTC/bin/sh -c #(nop) CMD ["bash"]
2023-12-13 17:16:17 UTC (buildkit.dockerfile.v0)COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit
2023-12-13 17:16:18 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c mkdir /AtlasPack # buildkit
2023-12-13 17:16:18 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ # buildkit
2023-12-13 17:16:18 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ # buildkit
2023-12-13 17:16:18 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/atlas-4S*.tsv /AtlasPack/ # buildkit
2023-12-13 17:16:18 UTC (buildkit.dockerfile.v0)COPY /AtlasPack/*.json /AtlasPack/ # buildkit
2023-12-13 17:18:56 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c apt-get update && apt-get install -y --no-install-recommends apt-utils autoconf build-essential bzip2 ca-certificates curl dc git graphviz libtool locales pandoc pandoc-citeproc pkg-config unzip wget xvfb && curl -sSL https://deb.nodesource.com/setup_17.x | bash - && apt-get install -y --no-install-recommends nodejs && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit
2023-12-13 17:19:04 UTC (buildkit.dockerfile.v0)ENV OS=Linux FIX_VERTEX_AREA=
2023-12-13 17:19:04 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-py310_23.10.0-1-Linux-x86_64.sh && bash Miniconda3-py310_23.10.0-1-Linux-x86_64.sh -b -p /usr/local/miniconda && rm Miniconda3-py310_23.10.0-1-Linux-x86_64.sh # buildkit
2023-12-13 17:19:04 UTC (buildkit.dockerfile.v0)ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONNOUSERSITE=1
2023-12-13 17:21:31 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c conda install -y python=3.10 libxslt=1.1 mkl=2021.2 mkl-service=2.3 numpy=1.18.1 pandas=1.2 scikit-learn=0.24 scipy=1.6 traits=6.2 zstd=1.4; sync && pip install matplotlib requests templateflow ; sync && chmod -R a+rX /usr/local/miniconda; sync && chmod +x /usr/local/miniconda/bin/*; sync && conda build purge-all; sync && conda clean -tipsy; sync # buildkit
2023-12-13 17:21:32 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c python -c "from matplotlib import font_manager" && sed -i 's/\(backend *: \).*$/\1Agg/g' $( python -c "import matplotlib; print(matplotlib.matplotlib_fname())" ) # buildkit
2023-12-13 17:21:44 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c python -c "from templateflow import api as tfapi; tfapi.get('MNI152NLin2009cAsym', resolution=2, suffix='T1w', desc=None); tfapi.get(template='MNI152NLin6Asym', resolution=2, suffix='T1w'); tfapi.get('MNI152NLin2009cAsym', resolution=1, desc='carpet',suffix='dseg'); tfapi.get(template='MNI152NLin2009cAsym', mode='image', suffix='xfm', extension='.h5'); tfapi.get('fsLR', density='32k');" && find $HOME/.cache/templateflow -type d -exec chmod go=u {} + && find $HOME/.cache/templateflow -type f -exec chmod go=u {} + # buildkit
2023-12-13 17:21:51 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c curl -sSL "http://neuro.debian.net/lists/$( lsb_release -c | cut -f2 ).us-ca.full" >> /etc/apt/sources.list.d/neurodebian.sources.list && apt-key add /usr/local/etc/neurodebian.gpg && (apt-key adv --refresh-keys --keyserver hkp://ha.pool.sks-keyservers.net 0xA5D32F012649A5A9 || true) # buildkit
2023-12-13 17:22:15 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends afni=18.0.05+git24-gb25b21054~dfsg.1-1~nd17.10+1+nd18.04+1 connectome-workbench=1.5.0-1~nd18.04+1 git-annex-standalone && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* # buildkit
2023-12-13 17:22:15 UTC (buildkit.dockerfile.v0)ENV AFNI_MODELPATH=/usr/lib/afni/models AFNI_IMSAVE_WARNINGS=NO AFNI_TTATLAS_DATASET=/usr/share/afni/atlases AFNI_PLUGINPATH=/usr/lib/afni/plugins
2023-12-13 17:22:15 UTC (buildkit.dockerfile.v0)ENV PATH=/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2023-12-13 17:22:30 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c echo "Downloading C3D ..." && mkdir /opt/c3d && curl -sSL --retry 5 https://sourceforge.net/projects/c3d/files/c3d/1.0.0/c3d-1.0.0-Linux-x86_64.tar.gz/download | tar -xzC /opt/c3d --strip-components=1 # buildkit
2023-12-13 17:22:30 UTC (buildkit.dockerfile.v0)ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2023-12-13 17:22:30 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/slicer /opt/fsl/lib/slicer # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/slicesdir /opt/fsl/lib/slicesdir # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/pngappend /opt/fsl/lib/pngappend # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/remove_ext /opt/fsl/lib/remove_ext # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-slicer /opt/fsl/bin/fsl-5.0-slicer # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-slicesdir /opt/fsl/bin/fsl5.0-slicesdir # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-pngappend /opt/fsl/bin/fsl5.0-pngappend # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/bin/fsl5.0-remove_ext /opt/fsl/bin/fsl5.0-remove_ext # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/slicer /opt/fsl/bin/slicer # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/slicesdir /opt/fsl/bin/slicesdir # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/pngappend /opt/fsl/bin/pngappend # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/share/fsl/5.0/bin/remove_ext /opt/fsl/bin/remove_ext # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libnewimage.so /opt/fsl/lib/libnewimage.so # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libmiscmaths.so /opt/fsl/lib/libmiscmaths.so # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libmiscpic.so /opt/fsl/lib/libmiscpic.so # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libfslio.so /opt/fsl/lib/libfslio.so # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libutils.so /opt/fsl/lib/libutils.so # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/libprob.so /opt/fsl/lib/libprob.so # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/libnewmat.so.10.0.0 /opt/fsl/lib/libnewmat.so.10 # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)COPY /usr/lib/fsl/5.0/applywarp /opt/fsl/lib/applywarp # buildkit
2023-12-13 17:22:31 UTC (buildkit.dockerfile.v0)ENV FSLDIR=/opt/fsl FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE FSLLOCKDIR= FSLMACHINELIST= FSLREMOTECALL= FSLGECUDAQ=cuda.q LD_LIBRARY_PATH=/opt/fsl/lib: PATH=/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin FSL_DEPS=libquadmath0;libnewimage.so;libmiscmaths.so
2023-12-13 17:24:04 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz | tar zxv --no-same-owner -C /opt --exclude="freesurfer/diffusion" --exclude="freesurfer/docs" --exclude="freesurfer/fsfast" --exclude="freesurfer/lib/cuda" --exclude="freesurfer/lib/qt" --exclude="freesurfer/matlab" --exclude="freesurfer/mni/share/man" --exclude="freesurfer/subjects/fsaverage_sym" --exclude="freesurfer/subjects/fsaverage3" --exclude="freesurfer/subjects/fsaverage4" --exclude="freesurfer/subjects/cvs_avg35" --exclude="freesurfer/subjects/cvs_avg35_inMNI152" --exclude="freesurfer/subjects/bert" --exclude="freesurfer/subjects/lh.EC_average" --exclude="freesurfer/subjects/rh.EC_average" --exclude="freesurfer/subjects/sample-*.mgz" --exclude="freesurfer/subjects/V1_average" --exclude="freesurfer/trctrain" # buildkit
2023-12-13 17:24:04 UTC (buildkit.dockerfile.v0)ENV FREESURFER_HOME=/opt/freesurfer FSF_OUTPUT_FORMAT=nii.gz
2023-12-13 17:24:04 UTC (buildkit.dockerfile.v0)ENV FUNCTIONALS_DIR=/opt/freesurfer/sessions LOCAL_DIR=/opt/freesurfer/local MINC_BIN_DIR=/opt/freesurfer/mni/bin MINC_LIB_DIR=/opt/freesurfer/mni/lib MNI_DIR=/opt/freesurfer/mni MNI_DATAPATH=/opt/freesurfer/mni/data
2023-12-13 17:24:04 UTC (buildkit.dockerfile.v0)ENV MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 SUBJECTS_DIR=/opt/freesurfer/subjects PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2023-12-13 17:24:04 UTC (buildkit.dockerfile.v0)ENV ANTSPATH=/usr/lib/ants
2023-12-13 17:24:21 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c mkdir -p $ANTSPATH && curl -sSL "https://dl.dropbox.com/s/gwf51ykkk5bifyj/ants-Linux-centos6_x86_64-v2.3.4.tar.gz" | tar -xzC $ANTSPATH --strip-components 1 # buildkit
2023-12-13 17:24:21 UTC (buildkit.dockerfile.v0)ENV PATH=/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2023-12-13 17:24:23 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c npm install -g svgo # buildkit
2023-12-13 17:24:34 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c npm install -g bids-validator@1.8.4 # buildkit
2023-12-13 17:24:34 UTC (buildkit.dockerfile.v0)ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=1
2023-12-13 17:24:35 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c useradd -m -s /bin/bash -G users xcp_d # buildkit
2023-12-13 17:24:35 UTC (buildkit.dockerfile.v0)WORKDIR /home/xcp_d
2023-12-13 17:24:35 UTC (buildkit.dockerfile.v0)ENV HOME=/home/xcp_d
2023-12-13 17:24:38 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c curl -o pandoc-2.2.2.1-1-amd64.deb -sSL "https://github.com/jgm/pandoc/releases/download/2.2.2.1/pandoc-2.2.2.1-1-amd64.deb" && dpkg -i pandoc-2.2.2.1-1-amd64.deb && rm pandoc-2.2.2.1-1-amd64.deb # buildkit
2023-12-13 17:24:39 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty # buildkit
2023-12-13 17:24:39 UTC (buildkit.dockerfile.v0)RUN /bin/sh -c ldconfig # buildkit
2023-12-13 17:24:39 UTC (buildkit.dockerfile.v0)WORKDIR /tmp/
2024-03-08 17:11:36 UTC/bin/sh -c #(nop) COPY dir:19eb5e2e528249df7f8a5af8807432a3de953862724ce1571a134867bc950f35 in /src/xcp_d
2024-03-08 17:11:36 UTC/bin/sh -c #(nop) ARG VERSION=0.0.1
2024-03-08 17:12:20 UTC|1 VERSION=0.6.3 /bin/sh -c echo "${VERSION}" > /src/xcp_d/xcp_d/VERSION && echo "include xcp_d/VERSION" >> /src/xcp_d/MANIFEST.in && pip install --no-cache-dir "/src/xcp_d[all]"
2024-03-08 17:12:21 UTC|1 VERSION=0.6.3 /bin/sh -c find $HOME -type d -exec chmod go=u {} + && find $HOME -type f -exec chmod go=u {} + && rm -rf $HOME/.npm $HOME/.conda $HOME/.empty
2024-03-08 17:12:22 UTC|1 VERSION=0.6.3 /bin/sh -c ldconfig
2024-03-08 17:12:22 UTC/bin/sh -c #(nop) WORKDIR /tmp/
2024-03-08 17:12:22 UTC/bin/sh -c #(nop) ENTRYPOINT ["/usr/local/miniconda/bin/xcp_d"]
2024-03-08 17:12:22 UTC/bin/sh -c #(nop) ARG BUILD_DATE
2024-03-08 17:12:22 UTC/bin/sh -c #(nop) ARG VCS_REF
2024-03-08 17:12:22 UTC/bin/sh -c #(nop) ARG VERSION
2024-03-08 17:12:22 UTC/bin/sh -c #(nop) LABEL org.label-schema.build-date=2024-03-08T17:11:31Z org.label-schema.name=xcp_d org.label-schema.description=xcp_d- postprocessing of fmriprep outputs org.label-schema.url=https://xcp-d.readthedocs.io/ org.label-schema.vcs-ref=2bca701 org.label-schema.vcs-url=https://github.com/PennLINC/xcp_d org.label-schema.version=0.6.3 org.label-schema.schema-version=1.0
Delete Tag
Please be careful as this will not just delete the reference but also the actual content!
For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.